HL_6CZR_068

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6CZR|1|1A|A|2829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_068 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1234

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6CZR|1|1A|G|2828
6CZR|1|1A|A|2829
6CZR|1|1A|A|2830
6CZR|1|1A|G|2831
6CZR|1|1A|A|2832
6CZR|1|1A|C|2833
6CZR|1|1A|C|2834
6CZR|1|1A|A|2835
6CZR|1|1A|C|2836

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19