HL_6CZR_109

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6CZR|1|2A|A|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_109 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1523

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6CZR|1|2A|G|182
6CZR|1|2A|A|183
6CZR|1|2A|A|184
6CZR|1|2A|A|185
6CZR|1|2A|C|186
6CZR|1|2A|A|187
6CZR|1|2A|U|188
6CZR|1|2A|C|189

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15