HL_6CZR_115

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6CZR|1|2A|G|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_115 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1425

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|2A|G|408
6CZR|1|2A|U|409
6CZR|1|2A|U|410
6CZR|1|2A|C|411
6CZR|1|2A|G|412
6CZR|1|2A|U|413
6CZR|1|2A|G|414
6CZR|1|2A|G|415
6CZR|1|2A|A|416
6CZR|1|2A|G|417
6CZR|1|2A|C|418

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15