HL_6CZR_151

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

6CZR|1|2A|A|1934, 6CZR|1|2A|C|1935, 6CZR|1|2A|A|1937

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_151 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1896

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CZR|1|2A|C|1930
6CZR|1|2A|G|1931
6CZR|1|2A|PSU|1932
6CZR|1|2A|A|1933
6CZR|1|2A|A|1934
6CZR|1|2A|C|1935
6CZR|1|2A|5MU|1936
6CZR|1|2A|A|1937
6CZR|1|2A|PSU|1938
6CZR|1|2A|A|1939
6CZR|1|2A|A|1940
6CZR|1|2A|OMC|1941
6CZR|1|2A|G|1942

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA