HL_6CZR_233

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6CZR|1|1A|A|1115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_233 not in the Motif Atlas

Homologous match to HL_9DFE_027

Geometric discrepancy: 0.2375

The information below is about HL_9DFE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CZR|1|1A|C|1109
6CZR|1|1A|U|1110
6CZR|1|1A|U|1111
6CZR|1|1A|A|1112
6CZR|1|1A|G|1113
6CZR|1|1A|A|1114
6CZR|1|1A|A|1115
6CZR|1|1A|G|1116
6CZR|1|1A|C|1117
6CZR|1|1A|A|1118
6CZR|1|1A|G|1119

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16