HL_6D3P_004

3D structure

PDB id

6D3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic virus (SCNMV)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAUCCGAGUUGCAAGAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D3P_004 not in the Motif Atlas

Geometric match to HL_6D3P_003

Geometric discrepancy: 0.0001

The information below is about HL_6D3P_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66482.1

Basepair signature

cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6D3P|1|A|C|12||||12_566
6D3P|1|A|C|13||||12_566
6D3P|1|A|A|14||||12_566
6D3P|1|A|U|15||||12_566
6D3P|1|A|C|16||||12_566
6D3P|1|A|C|17||||12_566
6D3P|1|A|G|18||||12_566
6D3P|1|A|A|19||||12_566
6D3P|1|A|G|20||||12_566
6D3P|1|A|U|21||||12_566
6D3P|1|A|U|22||||12_566
6D3P|1|A|G|23||||12_566
6D3P|1|A|C|24||||12_566
6D3P|1|A|A|25||||12_566
6D3P|1|A|A|26||||12_566
6D3P|1|A|G|27||||12_566
6D3P|1|A|A|28||||12_566
6D3P|1|A|G|29||||12_566

Current chains

Chain A

RNA (45-MER)

Nearby chains