HL_6D8L_001

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D8L_001 not in the Motif Atlas

Geometric match to HL_6DVK_001

Geometric discrepancy: 0.0677

The information below is about HL_6DVK_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6D8L|1|A|G|149
6D8L|1|A|G|150
6D8L|1|A|A|151
6D8L|1|A|A|152
6D8L|1|A|A|153
6D8L|1|A|C|154

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron