HL_6D8O_006

3D structure

PDB id

6D8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A230U

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUCUU

Length

5 nucleotides

Bulged bases

6D8O|1|B|U|236, 6D8O|1|B|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D8O_006 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.21

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

6D8O|1|B|A|235
6D8O|1|B|U|236
6D8O|1|B|C|237
6D8O|1|B|U|238
6D8O|1|B|U|239

Current chains

Chain B

Group I self-splicing intron

Nearby chains