HL_6DCB_001

3D structure

PDB id

6DCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6DCB|1|B|U|13||||5_564

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DCB_001 not in the Motif Atlas

Geometric match to HL_6SY6_001

Geometric discrepancy: 0.126

The information below is about HL_6SY6_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

6DCB|1|B|C|11||||5_564
6DCB|1|B|U|12||||5_564
6DCB|1|B|U|13||||5_564
6DCB|1|B|C|14||||5_564
6DCB|1|B|G|15||||5_564
6DCB|1|B|G|16||||5_564

Current chains

Chain B

human 7SK RNA stem-loop 1 proximal

Nearby chains

Chain A

7SK snRNA methylphosphate capping enzyme