HL_6DCC_002

3D structure

PDB id

6DCC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6DCC|1|B|U|13||||2_565

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DCC_002 not in the Motif Atlas

Geometric match to HL_5J7L_171

Geometric discrepancy: 0.1416

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6DCC|1|B|C|11||||2_565
6DCC|1|B|U|12||||2_565
6DCC|1|B|U|13||||2_565
6DCC|1|B|C|14||||2_565
6DCC|1|B|G|15||||2_565
6DCC|1|B|G|16||||2_565

Current chains

Chain B

human 7SK RNA stem-loop 1 proximal methylated

Nearby chains