HL_6DDD_005

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAUACAUAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|G|158
6DDD|1|1|U|159
6DDD|1|1|G|160
6DDD|1|1|A|161
6DDD|1|1|A|162
6DDD|1|1|U|163
6DDD|1|1|A|164
6DDD|1|1|C|165
6DDD|1|1|A|166
6DDD|1|1|U|167
6DDD|1|1|A|168
6DDD|1|1|G|169
6DDD|1|1|C|170

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28