HL_6DDD_023

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAUU

Length

7 nucleotides

Bulged bases

6DDD|1|1|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_023 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.1316

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6DDD|1|1|A|824
6DDD|1|1|G|825
6DDD|1|1|A|826
6DDD|1|1|A|827
6DDD|1|1|A|828
6DDD|1|1|U|829
6DDD|1|1|U|830

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2