HL_6DDD_027
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAACAGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDD_027 not in the Motif Atlas
- Homologous match to HL_4WF9_028
- Geometric discrepancy: 0.1212
- The information below is about HL_4WF9_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_42998.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DDD|1|1|G|1022
6DDD|1|1|A|1023
6DDD|1|1|A|1024
6DDD|1|1|A|1025
6DDD|1|1|C|1026
6DDD|1|1|A|1027
6DDD|1|1|G|1028
6DDD|1|1|C|1029
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain D
- 50S ribosomal protein L21
- Chain M
- 50S ribosomal protein L30
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