HL_6DDD_032

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6DDD|1|1|C|1362, 6DDD|1|1|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0975

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6DDD|1|1|G|1361
6DDD|1|1|C|1362
6DDD|1|1|U|1363
6DDD|1|1|C|1364
6DDD|1|1|G|1365
6DDD|1|1|U|1366
6DDD|1|1|C|1367

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L22

Chain Z

50S ribosomal protein L17