HL_6DDD_039

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

6DDD|1|1|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1527

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6DDD|1|1|A|1673
6DDD|1|1|U|1674
6DDD|1|1|G|1675
6DDD|1|1|A|1676
6DDD|1|1|G|1677
6DDD|1|1|A|1678
6DDD|1|1|A|1679
6DDD|1|1|U|1680
6DDD|1|1|U|1681

Current chains

Chain 1

23S rRNA

Nearby chains