HL_6DDD_050
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6DDD|1|1|G|2277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDD_050 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.0962
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6DDD|1|1|C|2275
6DDD|1|1|U|2276
6DDD|1|1|G|2277
6DDD|1|1|G|2278
6DDD|1|1|G|2279
6DDD|1|1|G|2280
6DDD|1|1|C|2281
6DDD|1|1|G|2282
6DDD|1|1|G|2283
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L16
Coloring options: