HL_6DDD_054
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUACAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDD_054 not in the Motif Atlas
- Homologous match to HL_4WF9_053
- Geometric discrepancy: 0.081
- The information below is about HL_4WF9_053
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6DDD|1|1|C|2382
6DDD|1|1|C|2383
6DDD|1|1|U|2384
6DDD|1|1|A|2385
6DDD|1|1|C|2386
6DDD|1|1|A|2387
6DDD|1|1|A|2388
6DDD|1|1|G|2389
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L27
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
Coloring options: