HL_6DDD_071

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCCAUGCCGAACA

Length

15 nucleotides

Bulged bases

6DDD|1|2|G|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_071 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.182

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6DDD|1|2|U|32
6DDD|1|2|U|33
6DDD|1|2|C|34
6DDD|1|2|C|35
6DDD|1|2|C|36
6DDD|1|2|A|37
6DDD|1|2|U|38
6DDD|1|2|G|39
6DDD|1|2|C|40
6DDD|1|2|C|41
6DDD|1|2|G|42
6DDD|1|2|A|43
6DDD|1|2|A|44
6DDD|1|2|C|45
6DDD|1|2|A|46

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain a

50S ribosomal protein L18