HL_6DDG_008

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1029

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6DDG|1|1|C|249
6DDG|1|1|G|250
6DDG|1|1|G|251
6DDG|1|1|C|252
6DDG|1|1|G|253
6DDG|1|1|A|254
6DDG|1|1|G|255

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28

Chain Q

50S ribosomal protein L35

Chain X

50S ribosomal protein L15