HL_6DDG_016

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6DDG|1|1|U|590, 6DDG|1|1|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_016 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.144

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6DDG|1|1|C|587
6DDG|1|1|G|588
6DDG|1|1|U|589
6DDG|1|1|U|590
6DDG|1|1|A|591
6DDG|1|1|A|592
6DDG|1|1|U|593
6DDG|1|1|G|594

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L21

Chain V

50S ribosomal protein L13