HL_6DDG_022
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 6DDG|1|1|U|792, 6DDG|1|1|A|796, 6DDG|1|1|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDG_022 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.2215
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6DDG|1|1|C|789
6DDG|1|1|G|790
6DDG|1|1|U|791
6DDG|1|1|U|792
6DDG|1|1|G|793
6DDG|1|1|A|794
6DDG|1|1|A|795
6DDG|1|1|A|796
6DDG|1|1|A|797
6DDG|1|1|G|798
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L22
- Chain L
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L32
- Chain P
- 50S ribosomal protein L34
Coloring options: