HL_6DDG_034

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6DDG|1|1|U|1433, 6DDG|1|1|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1605

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6DDG|1|1|G|1426
6DDG|1|1|U|1427
6DDG|1|1|U|1428
6DDG|1|1|G|1429
6DDG|1|1|A|1430
6DDG|1|1|U|1431
6DDG|1|1|A|1432
6DDG|1|1|U|1433
6DDG|1|1|U|1434
6DDG|1|1|C|1435

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23