HL_6DDG_038

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6DDG|1|1|A|1660, 6DDG|1|1|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0988

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6DDG|1|1|C|1656
6DDG|1|1|G|1657
6DDG|1|1|A|1658
6DDG|1|1|C|1659
6DDG|1|1|A|1660
6DDG|1|1|C|1661
6DDG|1|1|A|1662
6DDG|1|1|G|1663

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L22

Chain P

50S ribosomal protein L34