HL_6DDG_051

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6DDG|1|1|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1027

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6DDG|1|1|C|2275
6DDG|1|1|U|2276
6DDG|1|1|G|2277
6DDG|1|1|G|2278
6DDG|1|1|G|2279
6DDG|1|1|G|2280
6DDG|1|1|C|2281
6DDG|1|1|G|2282
6DDG|1|1|G|2283

Current chains

Chain 1

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16