HL_6DDG_059

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6DDG|1|1|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_059 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1701

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6DDG|1|1|U|2555
6DDG|1|1|G|2556
6DDG|1|1|U|2557
6DDG|1|1|A|2558
6DDG|1|1|G|2559
6DDG|1|1|U|2560
6DDG|1|1|C|2561
6DDG|1|1|G|2562

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36