HL_6DDG_070

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAUU

Length

7 nucleotides

Bulged bases

6DDG|1|1|A|826, 6DDG|1|1|U|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDG_070 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.1079

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6DDG|1|1|A|824
6DDG|1|1|G|825
6DDG|1|1|A|826
6DDG|1|1|A|827
6DDG|1|1|A|828
6DDG|1|1|U|829
6DDG|1|1|U|830

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2