HL_6DN3_004

3D structure

PDB id

6DN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAGAGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DN3_004 not in the Motif Atlas

Geometric match to HL_5C45_004

Geometric discrepancy: 0.0672

The information below is about HL_5C45_004

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6DN3|1|Y|G|88
6DN3|1|Y|U|89
6DN3|1|Y|A|90
6DN3|1|Y|G|91
6DN3|1|Y|A|92
6DN3|1|Y|G|93
6DN3|1|Y|U|94
6DN3|1|Y|C|95

Current chains

Chain Y

RNA (56-MER)

Nearby chains

Chain X

RNA RIBOSWITCH