HL_6DZI_006

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6DZI|1|A|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1436

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6DZI|1|A|G|193
6DZI|1|A|A|194
6DZI|1|A|A|195
6DZI|1|A|A|196
6DZI|1|A|C|197
6DZI|1|A|A|198
6DZI|1|A|U|199
6DZI|1|A|C|200

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L15

Chain y

50S ribosomal protein L28