HL_6DZI_020

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGGGUG

Length

6 nucleotides

Bulged bases

6DZI|1|A|G|707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_020 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3067

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6DZI|1|A|C|705
6DZI|1|A|G|706
6DZI|1|A|G|707
6DZI|1|A|G|708
6DZI|1|A|U|709
6DZI|1|A|G|710

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain E

50S ribosomal protein L4