HL_6DZI_029

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

6DZI|1|A|U|1075, 6DZI|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_029 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1479

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6DZI|1|A|G|1072
6DZI|1|A|G|1073
6DZI|1|A|A|1074
6DZI|1|A|U|1075
6DZI|1|A|A|1076
6DZI|1|A|A|1077
6DZI|1|A|G|1078
6DZI|1|A|C|1079

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain 3

Uncharacterized protein

Chain N

50S ribosomal protein L16