HL_6DZI_030

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

6DZI|1|A|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_030 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1634

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6DZI|1|A|G|1096
6DZI|1|A|A|1097
6DZI|1|A|A|1098
6DZI|1|A|A|1099
6DZI|1|A|C|1100
6DZI|1|A|A|1101
6DZI|1|A|G|1102
6DZI|1|A|C|1103

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain 3

Uncharacterized protein

Chain a

50S ribosomal protein L30