HL_6DZI_036

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

6DZI|1|A|C|1440, 6DZI|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_036 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.177

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6DZI|1|A|G|1439
6DZI|1|A|C|1440
6DZI|1|A|C|1441
6DZI|1|A|A|1442
6DZI|1|A|G|1443
6DZI|1|A|U|1444
6DZI|1|A|C|1445

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22