HL_6DZI_044

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

6DZI|1|A|A|1832, 6DZI|1|A|A|1834, 6DZI|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_044 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1856

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6DZI|1|A|C|1830
6DZI|1|A|A|1831
6DZI|1|A|A|1832
6DZI|1|A|C|1833
6DZI|1|A|A|1834
6DZI|1|A|C|1835
6DZI|1|A|A|1836
6DZI|1|A|G|1837

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34