HL_6DZI_067

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_067 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.1294

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6DZI|1|A|C|2818
6DZI|1|A|G|2819
6DZI|1|A|U|2820
6DZI|1|A|G|2821
6DZI|1|A|A|2822
6DZI|1|A|G|2823

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2