HL_6DZI_082

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_082 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1382

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6DZI|1|h|U|296
6DZI|1|h|G|297
6DZI|1|h|A|298
6DZI|1|h|G|299
6DZI|1|h|A|300
6DZI|1|h|G|301

Current chains

Chain h

16S rRNA

Nearby chains

Chain 5

30S ribosomal protein S17

Chain l

30S ribosomal protein S4

Chain m

30S ribosomal protein S5