HL_6DZI_098

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_098 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.1124

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6DZI|1|h|C|1056
6DZI|1|h|G|1057
6DZI|1|h|U|1058
6DZI|1|h|G|1059
6DZI|1|h|A|1060
6DZI|1|h|G|1061

Current chains

Chain h

16S rRNA

Nearby chains

Chain 8

30S ribosomal protein S2

Chain m

30S ribosomal protein S5