HL_6DZI_103

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_103 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.2603

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6DZI|1|h|C|1296
6DZI|1|h|U|1297
6DZI|1|h|G|1298
6DZI|1|h|C|1299
6DZI|1|h|A|1300
6DZI|1|h|A|1301
6DZI|1|h|C|1302
6DZI|1|h|U|1303
6DZI|1|h|C|1304
6DZI|1|h|G|1305

Current chains

Chain h

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S19

Chain 9

30S ribosomal protein S14

Chain v

30S ribosomal protein S13