HL_6DZI_107

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGCAUGUGAUACCGGGUAGGGGUUGUGUG

Length

29 nucleotides

Bulged bases

6DZI|1|A|U|285, 6DZI|1|A|U|288, 6DZI|1|A|C|291, 6DZI|1|A|G|292, 6DZI|1|A|G|293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_107 not in the Motif Atlas

Homologous match to HL_7A0S_071

Geometric discrepancy: 0.5628

The information below is about HL_7A0S_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|U|279
6DZI|1|A|G|280
6DZI|1|A|C|281
6DZI|1|A|A|282
6DZI|1|A|U|283
6DZI|1|A|G|284
6DZI|1|A|U|285
6DZI|1|A|G|286
6DZI|1|A|A|287
6DZI|1|A|U|288
6DZI|1|A|A|289
6DZI|1|A|C|290
6DZI|1|A|C|291
6DZI|1|A|G|292
6DZI|1|A|G|293
6DZI|1|A|G|294
6DZI|1|A|U|295
6DZI|1|A|A|296
6DZI|1|A|G|297
6DZI|1|A|G|298
6DZI|1|A|G|299
6DZI|1|A|G|300
6DZI|1|A|U|301
6DZI|1|A|U|302
6DZI|1|A|G|303
6DZI|1|A|U|304
6DZI|1|A|G|305
6DZI|1|A|U|306
6DZI|1|A|G|307

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28