HL_6DZK_030
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 6DZK|1|A|C|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZK_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.178
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.2
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6DZK|1|A|G|1338
6DZK|1|A|A|1339
6DZK|1|A|U|1340
6DZK|1|A|C|1341
6DZK|1|A|A|1342
6DZK|1|A|G|1343
6DZK|1|A|C|1344
6DZK|1|A|A|1345
6DZK|1|A|A|1346
6DZK|1|A|C|1347
6DZK|1|A|G|1348
6DZK|1|A|C|1349
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
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