HL_6DZP_006

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6DZP|1|A|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1436

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6DZP|1|A|G|193
6DZP|1|A|A|194
6DZP|1|A|A|195
6DZP|1|A|A|196
6DZP|1|A|C|197
6DZP|1|A|A|198
6DZP|1|A|U|199
6DZP|1|A|C|200

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain y

50S ribosomal protein L28