HL_6DZP_011

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

6DZP|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1302

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6DZP|1|A|U|387
6DZP|1|A|U|388
6DZP|1|A|G|389
6DZP|1|A|G|390
6DZP|1|A|G|391
6DZP|1|A|A|392
6DZP|1|A|U|393
6DZP|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24