HL_6DZP_015

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6DZP|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_015 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1704

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

6DZP|1|A|G|498
6DZP|1|A|G|499
6DZP|1|A|A|500
6DZP|1|A|C|501
6DZP|1|A|C|502
6DZP|1|A|A|503
6DZP|1|A|C|504
6DZP|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15