HL_6DZP_023

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_023 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2196

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6DZP|1|A|A|755
6DZP|1|A|A|756
6DZP|1|A|G|757
6DZP|1|A|A|758
6DZP|1|A|G|759
6DZP|1|A|U|760

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L27