HL_6DZP_030

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

6DZP|1|A|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_030 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1633

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|G|1096
6DZP|1|A|A|1097
6DZP|1|A|A|1098
6DZP|1|A|A|1099
6DZP|1|A|C|1100
6DZP|1|A|A|1101
6DZP|1|A|G|1102
6DZP|1|A|C|1103

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Uncharacterized protein

Chain a

50S ribosomal protein L30