HL_6DZP_031

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6DZP|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_031 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4743

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|C|1182
6DZP|1|A|U|1183
6DZP|1|A|U|1184
6DZP|1|A|A|1185
6DZP|1|A|G|1186
6DZP|1|A|A|1187
6DZP|1|A|A|1188
6DZP|1|A|G|1189
6DZP|1|A|C|1190
6DZP|1|A|A|1191
6DZP|1|A|G|1192

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16