HL_6DZP_046

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6DZP|1|A|U|1911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_046 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.1476

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6DZP|1|A|C|1909
6DZP|1|A|U|1910
6DZP|1|A|U|1911
6DZP|1|A|C|1912
6DZP|1|A|G|1913
6DZP|1|A|G|1914

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2