HL_6DZP_057

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6DZP|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_057 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1673

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6DZP|1|A|C|2472
6DZP|1|A|U|2473
6DZP|1|A|G|2474
6DZP|1|A|G|2475
6DZP|1|A|G|2476
6DZP|1|A|G|2477
6DZP|1|A|C|2478
6DZP|1|A|G|2479
6DZP|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27