HL_6DZP_060
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GUGUAAGUGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZP_060 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.236
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DZP|1|A|G|2547
6DZP|1|A|U|2548
6DZP|1|A|G|2549
6DZP|1|A|U|2550
6DZP|1|A|A|2551
6DZP|1|A|A|2552
6DZP|1|A|G|2553
6DZP|1|A|U|2554
6DZP|1|A|G|2555
6DZP|1|A|C|2556
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain N
- 50S ribosomal protein L16
- Chain P
- 50S ribosomal protein L18
- Chain X
- 50S ribosomal protein L27
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