HL_6DZP_076

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGCAUGUGAUACCGGGUAGGGGUUGUGUG

Length

29 nucleotides

Bulged bases

6DZP|1|A|U|285, 6DZP|1|A|U|288, 6DZP|1|A|C|291, 6DZP|1|A|G|292, 6DZP|1|A|G|293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZP_076 not in the Motif Atlas

Homologous match to HL_7A0S_071

Geometric discrepancy: 0.5627

The information below is about HL_7A0S_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|U|279
6DZP|1|A|G|280
6DZP|1|A|C|281
6DZP|1|A|A|282
6DZP|1|A|U|283
6DZP|1|A|G|284
6DZP|1|A|U|285
6DZP|1|A|G|286
6DZP|1|A|A|287
6DZP|1|A|U|288
6DZP|1|A|A|289
6DZP|1|A|C|290
6DZP|1|A|C|291
6DZP|1|A|G|292
6DZP|1|A|G|293
6DZP|1|A|G|294
6DZP|1|A|U|295
6DZP|1|A|A|296
6DZP|1|A|G|297
6DZP|1|A|G|298
6DZP|1|A|G|299
6DZP|1|A|G|300
6DZP|1|A|U|301
6DZP|1|A|U|302
6DZP|1|A|G|303
6DZP|1|A|U|304
6DZP|1|A|G|305
6DZP|1|A|U|306
6DZP|1|A|G|307

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28