HL_6E80_004

3D structure

PDB id

6E80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Corn aptamer in unliganded state

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGGAAGGAGGUCUGAGGAGGUCACUG

Length

28 nucleotides

Bulged bases

6E80|1|A|A|11||||18_655, 6E80|1|A|A|24||||18_655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6E80|1|A|C|5||||18_655
6E80|1|A|G|6||||18_655
6E80|1|A|A|7||||18_655
6E80|1|A|G|8||||18_655
6E80|1|A|G|9||||18_655
6E80|1|A|A|10||||18_655
6E80|1|A|A|11||||18_655
6E80|1|A|G|12||||18_655
6E80|1|A|G|13||||18_655
6E80|1|A|A|14||||18_655
6E80|1|A|G|15||||18_655
6E80|1|A|G|16||||18_655
6E80|1|A|U|17||||18_655
6E80|1|A|C|18||||18_655
6E80|1|A|U|19||||18_655
6E80|1|A|G|20||||18_655
6E80|1|A|A|21||||18_655
6E80|1|A|G|22||||18_655
6E80|1|A|G|23||||18_655
6E80|1|A|A|24||||18_655
6E80|1|A|G|25||||18_655
6E80|1|A|G|26||||18_655
6E80|1|A|U|27||||18_655
6E80|1|A|C|28||||18_655
6E80|1|A|A|29||||18_655
6E80|1|A|C|30||||18_655
6E80|1|A|U|31||||18_655
6E80|1|A|G|32||||18_655

Current chains

Chain A

RNA (36-MER)

Nearby chains